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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Cancers
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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30 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AGRP
ENSSSCG00000002775
ENSG00000159723
Agouti-related protein
Group enriched
Detected in some
brain:
9.1
pineal gland:
7.7
pituitary gland:
2.4
AVP
ENSSSCG00000007163
ENSG00000101200
Vasopressin-neurophysin 2-copeptin precursor
Tissue enriched
Detected in some
brain:
151.7
C1QL4
ENSSSCG00000000197
ENSG00000186897
Complement C1q like 4
Tissue enhanced
Detected in some
brain:
11.8
cervix:
22.0
endometrium:
9.0
fallopian tube:
10.5
DIO3
ENSSSCG00000036990
ENSG00000197406
Iodothyronine deiodinase 3
Tissue enhanced
Detected in many
brain:
11.6
skin:
12.5
DLK1
ENSSSCG00000035805
ENSG00000185559
Protein delta homolog 1 isoform B precursor
Tissue enhanced
Detected in some
brain:
56.5
kidney:
15.0
pituitary gland:
63.0
GABRE
ENSSSCG00000012754
ENSG00000102287
Gamma-aminobutyric acid type A receptor epsilon subunit
Group enriched
Detected in some
adipose tissue:
13.3
brain:
31.4
synovial tissue:
33.7
GABRQ
ENSSSCG00000012755
ENSG00000268089
Gamma-aminobutyric acid type A receptor theta subunit
Tissue enriched
Detected in some
brain:
26.4
GPR50
ENSSSCG00000023462
ENSG00000102195
G protein-coupled receptor 50
Tissue enriched
Detected in single
brain:
13.4
HCRT
ENSSSCG00000017410
ENSG00000161610
Orexin Orexin-A Orexin-B
Tissue enriched
Detected in some
brain:
66.0
MC3R
ENSSSCG00000007491
ENSG00000124089
Melanocortin receptor 3
Group enriched
Detected in some
brain:
6.7
pituitary gland:
19.7
na
ENSSSCG00000013162
Not detected
Not detected
na
ENSSSCG00000013951
Not detected
Not detected
na
ENSSSCG00000035095
Tissue enhanced
Detected in single
brain:
1.4
na
ENSSSCG00000035528
Not detected
Not detected
na
ENSSSCG00000035882
Tissue enhanced
Detected in some
brain:
3.1
dura mater:
3.9
mesothelial tissue:
2.1
na
ENSSSCG00000036264
Not detected
Not detected
na
ENSSSCG00000038129
Tissue enhanced
Detected in single
brain:
1.0
na
ENSSSCG00000038922
Not detected
Not detected
na
ENSSSCG00000039257
Not detected
Not detected
na
ENSSSCG00000039570
Not detected
Not detected
na
ENSSSCG00000039803
Tissue enhanced
Detected in some
brain:
1.7
stomach:
1.0
na
ENSSSCG00000039957
Group enriched
Detected in some
brain:
2.1
cornea:
1.7
na
ENSSSCG00000040726
Tissue enhanced
Detected in some
brain:
2.0
cartilage:
1.5
dura mater:
1.6
pituitary gland:
1.2
NPBWR2
ENSSSCG00000037868
ENSG00000125522
Neuropeptides B and W receptor 2
Group enriched
Detected in some
brain:
3.8
cornea:
7.2
mouth:
1.8
urinary bladder:
1.8
OTP
ENSSSCG00000014099
ENSG00000171540
Orthopedia homeobox
Tissue enriched
Detected in single
brain:
25.1
OXT
ENSSSCG00000007164
ENSG00000101405
Oxytocin-neurophysin 1 Oxytocin Neurophysin 1
Tissue enriched
Detected in some
brain:
257.2
PMCH
ENSSSCG00000000858
ENSG00000183395
Pro-MCH precursor
Tissue enriched
Detected in some
brain:
53.1
PRDM12
ENSSSCG00000005703
ENSG00000130711
PR/SET domain 12
Tissue enriched
Detected in single
brain:
13.3
TH
ENSSSCG00000039767
ENSG00000180176
Tyrosine hydroxylase
Group enriched
Detected in some
adrenal gland:
80.4
brain:
136.9
TMEM114
ENSSSCG00000007915
ENSG00000232258
Transmembrane protein 114
Tissue enhanced
Detected in some
brain:
15.3
pineal gland:
4.0
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